Publications

Maintained as a Zotero bibliography list

2022

  1. Nousias, O., Oikonomou, S., Manousaki, T., Papadogiannis, V., Angelova, N., Tsaparis, D., Tsakogiannis, A., Duncan, N., Estevez, A., Tzokas, K., Pavlidis, M., Chatziplis, D., Tsigenopoulos, C.S., 2022. Linkage mapping, comparative genome analysis, and QTL detection for growth in a non-model teleost, the meagre Argyrosomus regius, using ddRAD sequencing. Sci Rep 12, 5301. https://doi.org/10.1038/s41598-022-09289-4
  2. Gabed, N., Verret, F., Peticca, A., Kryvoruchko, I., Gastineau, R., Bosson, O., Séveno, J., Davidovich, O., Davidovich, N., Witkowski, A., Kristoffersen, J.B., Benali, A., Ioannou, E., Koutsaviti, A., Roussis, V., Gâteau, H., Phimmaha, S., Leignel, V., Badawi, M., Khiar, F., Francezon, N., Fodil, M., Pasetto, P., Mouget, J.-L., 2022. What Was Old Is New Again: The Pennate Diatom Haslea ostrearia (Gaillon) Simonsen in the Multi-Omic Age. Marine Drugs 20, 234. https://doi.org/10.3390/md20040234
  3. Kaitetzidou, E., Gilfillan, G.D., Antonopoulou, E., Sarropoulou, E., 2022. Sex-biased dynamics of three-spined stickleback (Gasterosteus aculeatus) gene expression patterns. Genomics 114, 266–277. https://doi.org/10.1016/j.ygeno.2021.12.010

2021

  1. Danis, T., Papadogiannis, V., Tsakogiannis, A., Kristoffersen, J.B., Golani, D., Tsaparis, D., Sterioti, A., Kasapidis, P., Kotoulas, G., Magoulas, A., Tsigenopoulos, C.S., Manousaki, T., 2021. Genome Analysis of Lagocephalus sceleratus: Unraveling the Genomic Landscape of a Successful Invader. Frontiers in Genetics 12, 2481. https://doi.org/10.3389/fgene.2021.790850
  2. Nousias, O., Montesanto, F., 2021. Metagenomic profiling of host-associated bacteria from 8 datasets of the red alga Porphyra purpurea with MetaPhlAn3. Marine Genomics 59, 100866. https://doi.org/10.1016/j.margen.2021.100866
  3. Zafeiropoulos, H., Gargan, L., Hintikka, S., Pavloudi, C., Carlsson, J., 2021. The Dark mAtteR iNvestigator (DARN) tool: getting to know the known unknowns in COI amplicon data. Metabarcoding and Metagenomics 5, e69657. https://doi.org/10.3897/mbmg.5.69657
  4. Bariche, M., Al-Mabruk, S. a. A., Ateş, M.A., Büyük, A., Crocetta, F., Dritsas, M., Edde, D., Fortič, A., Gavriil, E., Gerovasileiou, V., Gökoğlu, M., Huseyinoglu, F.M., Karachle, P.K., Kleitou, P., Kurt, T.T., Langeneck, J., Lardicci, C., Lipej, L., Pavloudi, C., Pinna, M., Rizgalla, J., Özen, M.R., Sedano, F., Taşkin, E., Yildiz, G., Zangaro, F., 2020. New Alien Mediterranean Biodiversity Records (March 2020). Mediterranean Marine Science 21, 129–145. https://doi.org/10.12681/mms.21987
  5. Oikonomou, S., Tsakogiannis, A., Kriaridou, C., Danis, T., Manousaki, T., Chatziplis, D., Papandroulakis, N., Mylonas, C.C., Triantafyllidis, A., Tsigenopoulos, C.S., 2021. First linkage maps and a pilot QTL analysis for early growth performance in common dentex (Dentex dentex) and sharpsnout seabream (Diplodus puntazzo). Aquaculture Reports 21, 100855. https://doi.org/10.1016/j.aqrep.2021.100855
  6. Nikolaivits Ε., Siaperas R., Agrafiotis Α., Ouazzani J., Magoulas A., Gioti A., and Topakas E., 2021. Functional and transcriptomic investigation of laccase activity in the presence of PCB29 identifies two novel enzymes and the multicopper oxidase repertoire of a marine-derived fungus. Science of the Total Environment, 775, 145818. https://doi.org/10.1016/j.scitotenv.2021.145818
  7. Bravakos, P., Mandalakis, M., Nomikou, P., Anastasiou, T.I., Kristoffersen, J.B., Stavroulaki, M., Kilias, S., Kotoulas, G., Magoulas, A., Polymenakou, P.N., 2021. Genomic adaptation of Pseudomonas strains to acidity and antibiotics in hydrothermal vents at Kolumbo submarine volcano, Greece. Sci Rep 11, 1336. https://doi.org/10.1038/s41598-020-79359-y
  8. Santi, I., Kasapidis, P., Karakassis, I., Pitta, P., 2021. A Comparison of DNA Metabarcoding and Microscopy Methodologies for the Study of Aquatic Microbial Eukaryotes. Diversity 13, 180. https://doi.org/10.3390/d13050180
  9. Polymenakou, P.N., Nomikou, P., Zafeiropoulos, H., Mandalakis, M., Anastasiou, T.I., Kilias, S., Kyrpides, N.C., Kotoulas, G., Magoulas, A., 2021. The Santorini Volcanic Complex as a Valuable Source of Enzymes for Bioenergy. Energies 14, 1414. https://doi.org/10.3390/en14051414
  10. Peñaloza, C., Manousaki, T., Franch, R., Tsakogiannis, A., Sonesson, A.K., Aslam, M.L., Allal, F., Bargelloni, L., Houston, R.D., Tsigenopoulos, C.S., 2021. Development and testing of a combined species SNP array for the European seabass (Dicentrarchus labrax) and gilthead seabream (Sparus aurata). Genomics 113, 2096–2107. https://doi.org/10.1016/j.ygeno.2021.04.038
  11. Mladineo, I., Hrabar, J., Trumbić, Ž., Manousaki, T., Tsakogiannis, A., Taggart, J.B., Tsigenopoulos, C.S., 2021. Community Parameters and Genome-Wide RAD-Seq Loci of Ceratothoa oestroides Imply Its Transfer between Farmed European Sea Bass and Wild Farm-Aggregating Fish. Pathogens 10, 100. https://doi.org/10.3390/pathogens10020100
  12. Zafeiropoulos H., Gioti A., Ninidakis S., Potirakis A., Paragkamian S., Angelova N., Antoniou A., Danis T, Kaitetzidou E., Kasapidis P., Kristoffersen J.B., Papadogiannis V., Pavloudi C., Ha Q.V., Lagnel J., Pattakos N., Perantinos G., Sidirokastritis D., Vavilis P., Kotoulas G., Manousaki T., Sarropoulou E., Tsigenopoulos C.S., Arvanitidis C., Magoulas A., Pafilis E., 2021. 0s and 1s in marine molecular research: a regional HPC perspective. GigaScience, Volume 10, Issue 8, giab053. https://doi.org/10.1093/gigascience/giab053
  13. Zafeiropoulos H., Gioti A., Ninidakis S., Potirakis A., Paragkamian S., Angelova N., Antoniou A., Danis T, Kaitetzidou E., Kasapidis P., Kristoffersen J.B., Papadogiannis V., Pavloudi C., Ha Q.V., Lagnel J., Pattakos N., Perantinos G., Sidirokastritis D., Vavilis P., Kotoulas G., Manousaki T., Sarropoulou E., Tsigenopoulos C.S., Arvanitidis C., Magoulas A., Pafilis E., 2021. The IMBBC HPC facility: history, configuration, usage statistics and related activities. Zenodo. https://doi.org/10.5281/zenodo.4665308


2020

  1. Gioti Α., Siaperas R., Nikolaivits E., Le Goff G., Ouazzani J., Kotoulas G., & Topakas E., 2020. Draft genome sequence of a Cladosporium species isolated from the mesophotic ascidian Didemnum maculosum. Microbiology Resource Announcements (ASM) 9 (18) e00311-20. https://doi.org/10.1128/MRA.00311-20
  2. Zafeiropoulos, H., Viet, H.Q., Vasileiadou, K., Potirakis, A., Arvanitidis, C., Topalis, P., Pavloudi, C., Pafilis, E. (2020). PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S ribosomal RNA, ITS, and COI marker genes. GigaScience, 2020 9:3: giaa022. https://doi.org/10.1093/gigascience/giaa022
  3. Danis, T., Tsakogiannis, A., Kristoffersen, J. B., Golani, D., Tsaparis, D., Kasapidis, P., … Manousaki, T. 2020. Building a high-quality reference genome assembly for the eastern Mediterranean Sea invasive sprinter Lagocephalus sceleratus (Tetraodontiformes, Tetraodontidae). BioRxiv, 2020.02.17.952580. https://doi.org/10.1101/2020.02.17.952580
  4. Tsakogiannis, A., Manousaki, T., Anagnostopoulou, V., Stavroulaki, M., Apostolaki, E.T., 2020. The Importance of Genomics for Deciphering the Invasion Success of the Seagrass Halophila stipulacea in the Changing Mediterranean Sea. Diversity 12, 263. https://doi.org/10.3390/d12070263
  5. Santi, I., Kasapidis, P., Psarra, S., Assimakopoulou, G., Pavlidou, A., Protopapa, M., Tsiola, A., Zeri, C., Pitta, P., 2020. Composition and distribution patterns of eukaryotic microbial plankton in the ultra-oligotrophic Eastern Mediterranean Sea. Aquatic Microbial Ecology 84, 155–173. https://doi.org/10.3354/ame01933
  6. Polymenakou, P.N., Mandalakis, M., Macheras, M., Oulas, A., Kristoffersen, J.B., Christakis, C.A., Terzoglou, V., Stavroulaki, M., 2020. High genetic diversity and variability of microbial communities in near-surface atmosphere of Crete island, Greece. Aerobiologia 36, 341–353. https://doi.org/10.1007/s10453-020-09636-w
  7. Papadaki, M., Kaitetzidou, E., Mylonas, C.C., Sarropoulou, E., 2020. Non-coding RNA Expression Patterns of Two Different Teleost Gonad Maturation Stages. Mar Biotechnol 22, 683–695. https://doi.org/10.1007/s10126-020-09991-2
  8. Obst, M., Exter, K., Allcock, A.L., Arvanitidis, C., Axberg, A., Bustamante, M., Cancio, I., Carreira-Flores, D., Chatzinikolaou, E., Chatzigeorgiou, G., Chrismas, N., Clark, M.S., Comtet, T., Dailianis, T., Davies, N., Deneudt, K., de Cerio, O.D., Fortič, A., Gerovasileiou, V., Hablützel, P.I., Keklikoglou, K., Kotoulas, G., Lasota, R., Leite, B.R., Loisel, S., Lévêque, L., Levy, L., Malachowicz, M., Mavrič, B., Meyer, C., Mortelmans, J., Norkko, J., Pade, N., Power, A.M., Ramšak, A., Reiss, H., Solbakken, J., Staehr, P.A., Sundberg, P., Thyrring, J., Troncoso, J.S., Viard, F., Wenne, R., Yperifanou, E.I., Zbawicka, M., Pavloudi, C., 2020. A Marine Biodiversity Observation Network for Genetic Monitoring of Hard-Bottom Communities (ARMS-MBON). Front. Mar. Sci. 0. https://doi.org/10.3389/fmars.2020.572680
  9. Koutsouveli, V., Manousaki, T., Riesgo, A., Lagnel, J., Kollias, S., Tsigenopoulos, C.S., Arvanitidis, C., Dounas, C., Magoulas, A., Dailianis, T., 2020. Gearing Up for Warmer Times: Transcriptomic Response of Spongia officinalis to Elevated Temperatures Reveals Recruited Mechanisms and Potential for Resilience. Front. Mar. Sci. 0. https://doi.org/10.3389/fmars.2019.00786
  10. Gerovasileiou, V., Pavloudi, C., Sedano, F., 2020. First record of the nudibranch Anteaeolidiella lurana (Ev. Marcus & Er. Marcus, 1967) in Greek waters. In: “New Alien Mediterranean Biodiversity Records” (March 2021). Medit. Mar. Sci. https://doi.org/10.12681/mms.25294

2019

  1. Natsidis, P., Tsakogiannis, A., Pavlidis, P., Tsigenopoulos, C.S., Manousaki, T., 2019. Phylogenomics investigation of sparids (Teleostei: Spariformes) using high-quality proteomes highlights the importance of taxon sampling. Commun Biol 2, 1–10. https://doi.org/10.1038/s42003-019-0654-5
    Preprint also available: Natsidis, P., Tsakogiannis, A., Pavlidis, P., Tsigenopoulos, C.S., Manousaki, T., 2019. Phylogenomics investigation of sparids (Teleostei: Spariformes) using high-quality proteomes highlights the importance of taxon sampling. bioRxiv preprint 746115. https://doi.org/10.1101/746115
  2. Zafeiropoulos, H., Viet, H.Q., Vasileiadou, K., Potirakis, A., Arvanitidis, C., Topalis, P., Pavloudi, C., Pafilis, E., 2019. PEMA: from the raw .fastq files of 16S rRNA and COI marker genes to the (M)OTU-table, a thorough metabarcoding analysis. bioRxiv preprint 709113. https://doi.org/10.1101/709113
  3. Kyriakis, D., Kanterakis, A., Manousaki, T., Tsakogiannis, A., Tsagris, M., Tsamardinos, I., Papaharisis, L., Chatziplis, D., Potamias, G., Tsigenopoulos, C.S., 2019. Scanning of Genetic Variants and Genetic Mapping of Phenotypic Traits in Gilthead Sea Bream Through ddRAD Sequencing. Front Genet 10. https://doi.org/10.3389/fgene.2019.00675
  4. Smyrli, M., Triga, A., Dourala, N., Varvarigos, P., Pavlidis, M., Quoc, V.H., Katharios, P., 2019. Comparative Study on A Novel Pathogen of European Seabass. Diversity of Aeromonas veronii in the Aegean Sea. Microorganisms 7, E504. https://doi.org/10.3390/microorganisms7110504
  5. Sarropoulou, E., Kaitetzidou, E., Papandroulakis, N., Tsalafouta, A., Pavlidis, M., 2019. Inventory of European Sea Bass (Dicentrarchus labrax) sncRNAs Vital During Early Teleost Development. Front Genet 10, 657. https://doi.org/10.3389/fgene.2019.00657
  6. Santi, I., Tsiola, A., Dimitriou, P.D., Fodelianakis, S., Kasapidis, P., Papageorgiou, N., Daffonchio, D., Pitta, P., Karakassis, I., 2019. Prokaryotic and eukaryotic microbial community responses to N and P nutrient addition in oligotrophic Mediterranean coastal waters: Novel insights from DNA metabarcoding and network analysis. Marine Environmental Research 150, 104752. https://doi.org/10.1016/j.marenvres.2019.104752
  7. Manousaki, T., Koutsouveli, V., Lagnel, J., Kollias, S., Tsigenopoulos, C.S., Arvanitidis, C., Magoulas, A., Dounas, C., Dailianis, T., 2019. A de novo transcriptome assembly for the bath sponge Spongia officinalis, adjusting for microsymbionts. BMC Research Notes 12, 813. https://doi.org/10.1186/s13104-019-4843-6
  8. Kaitetzidou, E., Katsiadaki, I., Lagnel, J., Antonopoulou, E., Sarropoulou, E., 2019. Unravelling paralogous gene expression dynamics during three-spined stickleback embryogenesis. Sci Rep 9, 3752. https://doi.org/10.1038/s41598-019-40127-2


2018

  1. Bounas, A., Tsaparis, D., Efrat, R., Gradev, G., Gustin, M., Mikulic, K., Rodríguez, A., Sarà, M., Kotoulas, G., Sotiropoulos, K., 2018. Genetic structure of a patchily distributed philopatric migrant: implications for management and conservation. Biol J Linn Soc 124, 633–644. https://doi.org/10.1093/biolinnean/bly073
  2. Bounas, A., Catsadorakis, G., Logotheti, A., Voslamber, B., Magoulas, A., Tsaparis, D., 2018. Conservation genetics of a resident population of Greylag Goose (Anser anser) at the southernmost limit of the species’ distribution in Europe. Avian Research 9, 47. https://doi.org/10.1186/s40657-018-0139-0
  3. Arvanitidis CD, Warwick RM, Somerfield PJ, Pavloudi C, Pafilis E, Oulas A, Chatzigeorgiou G, et al. 2018. Research Infrastructures offer capacity to address scientific questions never attempted before: Are all taxa equal? PeerJ Preprints 6:e26819v2 https://doi.org/10.7287/peerj.preprints.26819v2
  4. Christakis C.A., Polymenakou P.N., Kilias S.P., Kristoffersen J.B., Nielsen T., Nomikou P., Kotoulas G., & Magoulas A. 2018. What do I do with my metagenomes? A comparison of three online metagenomic analysis platforms, Hellenic Bioinformatics 11 – Hbio.info 2018, Thessaloniki, Greece- 15-18 November 2018. researchgate.net/publication/328392856
  5. Christakis, C. A., Polymenakou, P. N., Mandalakis, M., Nomikou, P., Kristoffersen, J. B., Lampridou, D., Kotoulas, G., and Magoulas, A. 2018. Microbial community differentiation between active and inactive sulfide chimneys of the Kolumbo submarine volcano, Hellenic Volcanic Arc. Extremophiles 22, 13–27. https://doi.org/10.1007/s00792-017-0971-x
  6. Machado, A. M., Sarropoulou, E., Castro, L. F. C., Vasconcelos, V. & Cunha, I. 2018. An important resource for understanding bio-adhesion mechanisms: Cement gland transcriptomes of two goose barnacles, Pollicipes pollicipes and Lepas anatifera (Cirripedia, Thoracica). Mar. Genomics. https://doi.org/10.1016/j.margen.2018.11.001
  7. Manousaki, T., Tsakogiannis, A., Lagnel, J., Kyriakis, D., Duncan, N., Estevez, A., Tsigenopoulos, C.S., 2018. Muscle and liver transcriptome characterization and genetic marker discovery in the farmed meagre, Argyrosomus regius. Mar Genomics 39, 39–44. https://doi.org/10.1016/j.margen.2018.01.002
  8. Tsakogiannis, A., Manousaki, T., Lagnel, J., Papanikolaou, N., Papandroulakis, N., Mylonas, C.C., Tsigenopoulos, C.S., 2018. The Gene Toolkit Implicated in Functional Sex in Sparidae Hermaphrodites: Inferences From Comparative Transcriptomics. Front Genet 9, 749. https://doi.org/10.3389/fgene.2018.00749
  9. Pauletto, M., Manousaki, T., Ferraresso, S., Babbucci, M., Tsakogiannis, A., Louro, B., Vitulo, N., Quoc, V.H., Carraro, R., Bertotto, D., Franch, R., Maroso, F., Aslam, M.L., Sonesson, A.K., Simionati, B., Malacrida, G., Cestaro, A., Caberlotto, S., Sarropoulou, E., Mylonas, C.C., Power, D.M., Patarnello, T., Canario, A.V.M., Tsigenopoulos, C., Bargelloni, L., 2018. Genomic analysis of Sparus aurata reveals the evolutionary dynamics of sex-biased genes in a sequential hermaphrodite fish. Commun Biol 1, 1–13. https://doi.org/10.1038/s42003-018-0122-7
  10. Tsakogiannis, A., Manousaki, T., Lagnel, J., Sterioti, A., Pavlidis, M., Papandroulakis, N., Mylonas, C.C., Tsigenopoulos, C.S., 2018. The transcriptomic signature of different sexes in two protogynous hermaphrodites: Insights into the molecular network underlying sex phenotype in fish. Sci Rep 8, 3564. https://doi.org/10.1038/s41598-018-21992-9


2017

  1. Pavloudi C, Oulas A, Vasileiadou K, Kotoulas G, De Troch M, Friedrich MW, Arvanitidis C. 2017. Diversity and abundance of sulfate-reducing microorganisms in a Mediterranean lagoonal complex (Amvrakikos Gulf, Ionian Sea) derived from dsrB gene. Aquat Microb Ecol 79:209-219. https://doi.org/10.3354/ame01829
  2. Antoniou, A., Kasapidis, P., Kotoulas, G., Mylonas, C.C., Magoulas, A., 2017. Genetic diversity of Atlantic Bluefin tuna in the Mediterranean Sea: insights from genome-wide SNPs and microsatellites. Journal of Biological Research-Thessaloniki 24, 3. https://doi.org/10.1186/s40709-017-0062-2
  3. Sarropoulou, E., Sundaram, A.Y.M., Kaitetzidou, E., Kotoulas, G., Gilfillan, G.D., Papandroulakis, N., Mylonas, C.C., Magoulas, A., 2017. Full genome survey and dynamics of gene expression in the greater amberjack Seriola dumerili.Gigascience. https://doi.org/10.1093/gigascience/gix108
  4. Kaitetzidou, E., Ludwig, A., Gessner, J. & Sarropoulou, E. 2017. Expression Patterns of Atlantic Sturgeon ( Acipenser oxyrinchus ) During Embryonic Development. G3; Genes|Genomes|Genetics. https://doi.org/10.1534/g3.116.036699
  5. Pavlidi, N., Gioti, A., Wybouw, N., Dermauw, W., Ben-Yosef, M., Yuval, B., Jurkevich, E., Kampouraki, A., Van Leeuwen, T., Vontas, J., 2017. Transcriptomic responses of the olive fruit fly Bactrocera oleae and its symbiont Candidatus Erwinia dacicola to olive feeding. Sci Rep 7, 42633. https://doi.org/10.1038/srep42633

2016

  1. Bravakos, P., Kotoulas, G., Skaraki, K., Pantazidou, A., Economou-Amilli, A., 2016. A polyphasic taxonomic approach in isolated strains of Cyanobacteria from thermal springs of Greece. Molecular Phylogenetics and Evolution 98, 147–160. https://doi.org/10.1016/j.ympev.2016.02.009
  2. Pavloudi, C., Oulas, A., Vasileiadou, K., Sarropoulou, E., Kotoulas, G., Arvanitidis, C. 2016. Salinity is the major factor influencing the sediment bacterial communities in a Mediterranean lagoonal complex (Amvrakikos Gulf, Ionian Sea). Marine Genomics 28, 71-81. https://doi.org/10.1016/j.margen.2016.01.005
  3. Varsos C, Patkos T, Oulas A, Pavloudi C, Gougousis A, Ijaz U, Filiopoulou I, Pattakos N, Vanden Berghe E, Fernández-Guerra A, Faulwetter S, Chatzinikolaou E, Pafilis E, Bekiari C, Doerr M, Arvanitidis C 2016. Optimized R functions for analysis of ecological community data using the R virtual laboratory (RvLab). Biodiversity Data Journal 4: e8357. https://doi.org/10.3897/BDJ.4.e8357
  4. Braasch, I., Gehrke, A.R., Smith, J.J., Kawasaki, K., Manousaki, T., Pasquier, J., Amores, A., Desvignes, T., Batzel, P., Catchen, J., 2016. The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nat Genet 48, 427-437. https://doi.org/10.1038/ng.3526
  5. Sarropoulou, E., Tsalafouta, A., Sundaram, A.Y.M., Gilfillan, G.D., Kotoulas, G., Papandroulakis, N., Pavlidis, M., 2016. Transcriptomic changes in relation to early-life events in the gilthead sea bream (Sparus aurata). BMC Genomics 2016. https://doi.org/10.1186/s12864-016-2874-0

2015

  1. Christakis C.A., Polymenakou P.N., Mandalakis M., Oulas A., Kotoulas G., Gontikaki E., Smyrli M., Katharios P., Nomikou P., Magoulas A. 2015. Culture-dependent and culture-independent studies shed light in the prokaryotic diversity of microbes in the Kolumbo volcano and Santorini caldera, Greece. 6th Mikrobiokosmos Conference 2015 – New Horizons in the Micro World. Athens, Greece, 3-5 April 2015 researchgate.net/publication/273131887
  2. Manousaki, T., Tsakogiannis, A., Taggart, J.B., Palaiokostas, C., Tsaparis, D., Lagnel, J., Chatziplis, D., Magoulas, A., Papandroulakis, N., Mylonas, C.C., Tsigenopoulos, C.S., 2015. Exploring a Nonmodel Teleost Genome Through RAD Sequencing-Linkage Mapping in Common Pandora, Pagellus erythrinus and Comparative Genomic Analysis. G3 (Bethesda) 6, 509–519. https://doi.org/10.1534/g3.115.023432
  3. Polymenakou, P. N., Christakis, C. A., Mandalakis, M., and Oulas, A. 2015. Pyrosequencing analysis of microbial communities reveals dominant cosmopolitan phylotypes in deep-sea sediments of the eastern Mediterranean Sea. Res. Microbiol. 166, 448–457. https://doi.org/10.1016/j.resmic.2015.03.005
  4. Kaitetzidou, E., Xiang, J., Antonopoulou, E., Tsigenopoulos, C. S. & Sarropoulou, E. 2015. Dynamics of gene expression patterns during early development of the European seabass (Dicentrarchus labrax). Physiol. Genomics. https://doi.org/10.1152/physiolgenomics.00001.2015
  5. Ilias, A., Lagnel, J., Kapantaidaki, D.E., Roditakis, E., Tsigenopoulos, C.S., Vontas, J., Tsagkarakou, A., 2015. Transcription analysis of neonicotinoid resistance in Mediterranean (MED) populations of B. tabaci reveal novel cytochrome P450s, but no nAChR mutations associated with the phenotype. BMC Genomics 16, 939. https://doi.org/10.1186/s12864-015-2161-5
  6. Grigoraki, L., Lagnel, J., Kioulos, I., Kampouraki, A., Morou, E., Labbé, P., Weill, M., Vontas, J., 2015. Transcriptome Profiling and Genetic Study Reveal Amplified Carboxylesterase Genes Implicated in Temephos Resistance, in the Asian Tiger Mosquito Aedes albopictus. PLOS Neglected Tropical Diseases 9, e0003771. https://doi.org/10.1371/journal.pntd.0003771

2014

  1. Manousaki, T., Tsakogiannis, A., Lagnel, J., Sarropoulou, E., Xiang, J.Z., Papandroulakis, N., Mylonas, C.C., Tsigenopoulos, C.S., 2014. The sex-specific transcriptome of the hermaphrodite sparid sharpsnout seabream (Diplodus puntazzo). BMC Genomics 15. https://doi.org/10.1186/1471-2164-15-655
  2. Tsigenopoulos, C.S., Louro, B., Chatziplis, D., Lagnel, J., Vogiatzi, E., Loukovitis, D., Franch, R., Sarropoulou, E., Power, D.M., Patarnello, T., Mylonas, C.C., Magoulas, A., Bargelloni, L., Canario, A., Kotoulas, G., 2014. Second generation genetic linkage map for the gilthead sea bream Sparus aurata L. Marine Genomics, Special Issue: Genomics In Aquaculture 2013 Symposium 18, 77–82. https://doi.org/10.1016/j.margen.2014.09.008
2013
  1. Kilias, S. P., Nomikou, P., Papanikolaou, D., Polymenakou, P. N., Godelitsas, A., Argyraki, A., Carey, S., Gamaletsos, P., Mertzimekis, T. J., Stathopoulou, E., Goettlicher, J., Steininger, R., Betzelou, K., Livanos, I., Christakis, C., Bell, K. C., and Scoullos, M. 2013. New insights into hydrothermal vent processes in the unique shallow-submarine arc-volcano, Kolumbo (Santorini), Greece. Sci. Rep. 3, 2421. http://doi.org/10.1038/srep02421

2012

  1. Sarropoulou, E., Galindo-Villegas, J., García-Alcázar, A., Kasapidis, P. & Mulero, V. Characterization of European sea bass transcripts by RNA SEQ after oral vaccine against V. anguillarum. Mar. Biotechnol. 2012. https://doi.org/10.1007/s10126-012-9466-z

prior to 2012

  1. Sarropoulou, E., Sepulcre, P., Poisa-Beiro, L., Mulero, V., Meseguer, J., Figueras, A., Novoa, B., Terzoglou, V., Reinhardt, R., & Magoulas, A. 2009. Profiling of infection specific mRNA transcripts of the European seabass Dicentrarchus labrax. BMC Genomics, 10(1), 157. http://doi.org/10.1186/1471-2164-10-157

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