IMBBC HPC >200 software tools
Sequencing: minIon, illumina and hybrid sequence assembly*
Transcriptome analysis (RNASeq)*
- Read pre-processing
- Assembly and read mapping
- Annotation
- BLAST2GO
- Differential gene expression
Metabarcoding/metagenetics
- Qiime **
- CREST
- ARB/SILVA
Statistics
- RStudio (intranet-only)
Biodiversity ecology analyses*, **
- Vegan-based library scripts
- Taxonomic Distinctness, Taxon Dive
*: in-house parallelized solutions available
**: publicly available via the http://portal.lifewatch greece.eu
